Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis

single cell sequencing;SNS;单细胞测序;单细胞多组学
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Arun C Habermann, Austin J Gutierrez, Linh T Bui, Stephanie L Yahn, Nichelle I Winters, Carla L Calvi, Lance Peter, Mei-I Chung, Chase J Taylor, Christopher Jetter, Latha Raju, Jamie Roberson, Guixiao Ding, Lori Wood, Jennifer M S Sucre, Bradley W Richmond, Ana P Serezani, Wyatt J McDonnell, Simon B Mallal, Matthew J Bacchetta, James E Loyd, Ciara M Shaver, Lorraine B Ware, Ross Bremner, Rajat Walia, Timothy S Blackwell, Nicholas E Banovich, Jonathan A Kropski

  • Sci Adv
  • 2020
  • 14.957
  • 6(28):eaba1972.
  • 单细胞测序
  • 技术分享

Abstract

Pulmonary fibrosis (PF) is a form of chronic lung disease characterized by pathologic epithelial remodeling and accumulation of extracellular matrix (ECM). To comprehensively define the cell types, mechanisms, and mediators driving fibrotic remodeling in lungs with PF, we performed single-cell RNA sequencing of single-cell suspensions from 10 nonfibrotic control and 20 PF lungs. Analysis of 114,396 cells identified 31 distinct cell subsets/states. We report that a remarkable shift in epithelial cell phenotypes occurs in the peripheral lung in PF and identify several previously unrecognized epithelial cell phenotypes, including a KRT5- /KRT17 + pathologic, ECM-producing epithelial cell population that was highly enriched in PF lungs. Multiple fibroblast subtypes were observed to contribute to ECM expansion in a spatially discrete manner. Together, these data provide high-resolution insights into the complexity and plasticity of the distal lung epithelium in human disease and indicate a diversity of epithelial and mesenchymal cells contribute to pathologic lung fibrosis.
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