AIRR Community Guide to Planning and Performing AIRR-Seq Experiments

AIRR-seq; Antibody; Immune repertoire; Immunoglobulin; Next-generation sequencing; T-cell receptor; V(D)J recombination.
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Anne Eugster, Magnolia L Bostick, Nidhi Gupta, Encarnita Mariotti-Ferrandiz, Gloria Kraus, Wenzhao Meng, Cinque Soto, Johannes Trück, Ulrik Stervbo, Eline T Luning Prak; AIRR Community

  • Methods Mol Biol
  • 2022:2453:261-278.
  • 单细胞测序

Abstract

The development of high-throughput sequencing of adaptive immune receptor repertoires (AIRR-seq of IG and TR rearrangements) has provided a new frontier for in-depth analysis of the immune system. The last decade has witnessed an explosion in protocols, experimental methodologies, and computational tools. In this chapter, we discuss the major considerations in planning a successful AIRR-seq experiment together with basic strategies for controlling and evaluating the outcome of the experiment. Members of the AIRR Community have authored several chapters in this edition, which cover step-by-step instructions to successfully conduct, analyze, and share an AIRR-seq project. Keywords: AIRR-seq; Antibody; Immune repertoire; Immunoglobulin; Next-generation sequencing; T-cell receptor; V(D)J recombination.
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